Daniele Catanzaro

Scientific Production

This webpage reports on my scientific production and is intended for my own use.

The works listed below are classified by application areas and pertain exclusively to manuscripts submitted to or published in international peer-review scientific journals. I only sign articles where I am the lead author or have made substantial contributions. Some of the linked files may be covered by publisher copyrights. If you reached this page, please ensure that your institution has the appropriate subscription before accessing any of the PDFs below.

Keywords: combinatorial optimization, integer programming, polyhedral combinatorics, decomposition algorithms, branch-&-cut, branch-price-&-cut, computational complexity, routing, network design, coloring, covering, partitioning, location, games on graphs, constructive characterizations, high performance computing, massive parallel enumeration, enumeration of trees, lattices of unrooted binary trees, tree imbalance, tree coding, Huffman coding, information entropy, entropy encoding, cross-entropy encoding, Kullback–Leibler divergence, encryption schemes, tree metric, submodular functions, convexity, Schur convexity, phylogenetics, phylogenetic networks, mathematical modeling of tumor progression, genome-wide association studies, medical bioinformatics, deep reinforcement learning, hierarchical clustering, optimization aspects of machine learning.

Journals & Metrics

  • Scopus author output analysis
  • ORCID: 0000-0001-9427-1562 
  • Journals in Operations Research in which I have published so far:
    • Computers & Operations Research
    • Discrete Applied Mathematics
    • Discrete Optimization
    • European Journal of Operational Research
    • Informs Journal on Computing
    • International Transactions in Operational Research
    • MDPI Algorithms
    • Networks
    • Operations Research Letters
    • Optimization Letters
    • 4OR
  • Journals in Bioinformatics in which I have published so far:
    • Bioinformatics
    • BMC Algorithms for Molecular Biology
    • BMC Evolutionary Biology
    • Evolutionary Bioinformatics
    • IEEE/ACM Transactions in Computational Biology and Bioinformatics
    • Human Immunology
    • PLoS One

Research projects that supported the scientific production reported below

Classification of the scientific production by topics

Network design with applications to mathematics of evolution and computational phylogenetics

Coloring and covering with applications to haplotyping & disease association studies

Graph theory

  • D. Catanzaro, S. Chaplick, S. Felsner, B. V. Halldórsson, M. M. Halldórsson, T. Hixon, and J. Stacho. Max point-tolerance graphs. Discrete Applied Mathematics, 216(1): 84-97, 2017.  

Cutting plane methods

Telecommunications, manufacturing, scheduling, partitioning, routing under uncertainty, inventory optimization and deep reinforcement learning

Articles submitted to international peer-review journals:

Articles in preparation:

  • D. Catanzaro, R. Pesenti, R. Ronco, and A. Sapucaia. Characterizing path-length matrices of unrooted binary trees, 2023.
  • D. Catanzaro, H. Dehaybe, and A. Sapucaia. Matheuristics for the Balanced Minimum Evolution Problem, 2023.
  • D. Catanzaro and R. Pesenti. On numerical instabilities of Balanced Minimum Evolution Problem, 2023.

Other Publications (Book Chapters, Conference Proceedings, Invited Talks…)

Codes & data frequently requested

Feel free to contact me in the case instances of specific problems or source codes for any of the above works may be needed.